BMC Evol Biol 15 : 32 For the bp library Athe estimated paired distance range was to bp while for the bp library Bthe estimated paired distance range was to bp. S30 Table: Functions over-represented in duplicated genes of the Asian seabass.
In addition to Lates calcariferthe genomes analyzed included A six teleosts Danio rerioGadus morhuaGasterosteus aculeatusOryzias latipesTakifugu rubripesTetraodon nigroviridis or B six vertebrates Anolis carolinensisCallorhinchus miliiGallus gallusHomo sapiensPetromyzon marinusand Xenopus tropicalis.
Upstream to this dense region, the telomeric repeats were dispersed and intersected with eight predicted genes Fig 6B. Bioinformatics 23 : — Thus, both nuclear and mitochondrial genome sequences point to L.
Finally, if a given genome scaffold had markers from multiple linkage groups aligned to it, a manual inspection was performed to select for the linkage group that was represented predominantly. Kumar Katneni V 14. Hubei Agr.
The evolutionary old group of genes, SPANX-N , may partially escape this regulation possibly due to a lower density of CpG dinucleotides that leads to transcription of these genes in some nongametogenic tissues. Turner SW 6 ,. The Asian seabass B chromosomes were found to be mosaics of different autosomal chromosomes; similar to what has been reported for other fish B chromosomes [ 61 , 62 ].
Figure 5. The optical map and the primary genome assembly v1 were in excellent agreement with only 55 discordances identified S15 Table. Using our annotated seabass genome, we set out to identify the potential role of recently duplicated genes towards functional diversification in Asian seabass.