Anuradha Wickramarachchi
ORCID: orcid.org/0000-0003-4160-59651 na1, Brendan Hosking1 na1, Yatish Jain
ORCID: orcid.org/0000-0002-0556-65861,2 na1, John Grimes3, Mitchell J. O’Brien
ORCID: orcid.org/0000-0003-0662-91011, Tracey Wright3, Mark A. Burgess4, Victor San Kho Lin
ORCID: orcid.org/0000-0002-3940-47295, Florian Reisinger5, Oliver Hofmann5, Michael Lawley
ORCID: orcid.org/0000-0001-9508-47693, Laurence O. W. Wilson1,2, Natalie A. Twine1,2 & …Denis C. Bauer
ORCID: orcid.org/0000-0001-8033-98102,6,7
Nature Biotechnology
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Fig. 1: sBeacon application cases and comparison with existing implementations.
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Acknowledgements
The authors thank CSIRO for financial support and the Australian Genomics Health Alliances for their input to this work.
Author information
Author notes
These authors contributed equally: Anuradha Wickramarachchi, Brendan Hosking, Yatish Jain.
Authors and Affiliations
Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Westmead, New South Wales, Australia
Anuradha Wickramarachchi, Brendan Hosking, Yatish Jain, Mitchell J. O’Brien, Laurence O. W. Wilson & Natalie A. Twine
Applied BioSciences, Faculty of Science and Engineering, Macquarie University, Macquarie Park, New South Wales, Australia
Yatish Jain, Laurence O. W. Wilson, Natalie A. Twine & Denis C. Bauer
Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Herston, Queensland, Australia
John Grimes, Tracey Wright & Michael Lawley
Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, Australian Capital Territory, Australia
Mark A. Burgess
Centre for Cancer Research, University of Melbourne, Victorian Comprehensive Cancer Centre, Melbourne, Victoria, Australia
Victor San Kho Lin, Florian Reisinger & Oliver Hofmann
Department of Biomedical Sciences, Macquarie University, Macquarie Park, New South Wales, Australia
Denis C. Bauer
Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Adelaide, South Australia, Australia
Denis C. Bauer
Contributions
A.W., B.H. and T.W. implemented sBeacon and conducted experiments with Y.J., M.J.O’B. and M.A.B.; J.G. and M.L. guided Ontoserver integration; V.S.K.L., F.R., O.H., L.O.W.W., N.A.T. and D.C.B. conceived and supervised the study. All authors contributed to the document.
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The authors declare no competing interests.
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Nature Biotechnology thanks Jordi Rambla and the other, anonymous, reviewer(s) for their contribution to the peer review of this work.
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Cite this article
Wickramarachchi, A., Hosking, B., Jain, Y. et al. Scalable genomic data exchange and analytics with sBeacon.
Nat Biotechnol (2023). https://doi.org/10.1038/s41587-023-01972-9
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Published: 14 September 2023
DOI: https://doi.org/10.1038/s41587-023-01972-9
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